Those are valid concerns/criticisms shared by a lot of people in the industry. Bonobos, for example, will likely fall under what is being called "Consortium Management", meaning that the zoos holding the species would continue to manage them as a collective, but they, themselves, would be responsible for maintaining the population, hiring a population management specialist, making the breeding and transfer plans etc., without the official support of the AZA, itself. It is a major overhaul of the system, and it has been in the works for some time now. The draft is out now, with the new program scheduled to roll out next year. The 15 facilities and 50% of the population criteria are set in stone, though, and they said to expect a drastic drop in the number of official SSPs.
Going back to ungulates, for example, in the Antelope, Cattle, Giraffid, & Camelid TAG, the only species that will remain official SSPs are: addax, addra gazelle, common eland, common wildebeest, eastern bongo, generic giraffe, greater kudu, lowland nyala, Masai giraffe, okapi, scimitar-horned oryx, yellow-backed duiker, and possibly plains bison, with the blue duiker, bontebok, and lesser kudu sitting on the threshold. the Cervid TAG will only have the Reeve's muntjac, and the Caprid TAG will only have the Sichuan takin. The Ungulate TAG as a whole (as I imagine all the TAGs are) are now working to determine how the other species are going to be managed moving forward-- consortium management, species monitoring, phase out, etc. There is a major fear that upper management across the AZA will start dropping animals like flies just because they aren't official SSPs anymore. The Ungulate TAG is working to develop talking points and educational material to meet with upper management ahead of the roll out of the new program to get ahead of this problem. People look at the current phase outs and are upset, but most of these species (with the exception of gaur and dik-dik) are practically gone anyways. The TAG is having to double down and work hard to protect what we still have in enough numbers moving forward, especially because of the changes coming to the SSP program.