Here's my list; by taxonomies, and in order of frequency! However, some of the places I saw them no longer have them there; I will write said places in bold.
Crocodiles:
- Nile crocodile: Barcelona, Lisbon and Bronx zoos, Sigean safari park, CRARC, Bioparc Valencia, Faunia and Prague crocodile gallery: 8 zoos
- Dwarf crocodile: Barcelona, Whipsnade and Berlin zoos, Aqualeon safari park, Bioparc Valencia, American Museum of natural history: 6 zoos
- Saltwater crocodile: Barcelona, Singapore and Taronga zoos, Sydney aquarium: 4 zoos
- Johnston's crocodile: Taronga zoo, Prague crocodile gallery, Sydney aquarium: 3 zoos
- Cuban crocodile: Barcelona (off exhibit) and Bronx zoos, Prague crocodile gallery: 3 zoos
- Siamese crocodile: Barcelona zoo and Prague crocodile gallery: 2 zoos
- Morelet's crocodile: Barcelona zoo, Prague crocodile gallery: *2 zoos*
- West African crocodile: Barcelona and Dublin zoos: 2 zoos
Philippine crocodile: London zoo: 1 zoo
- Mugger crocodile: Barcelona zoo: 1 zoo
- Slender-snouted crocodile: American museum of natural history: 1 zoo
- American crocodile: Berlin zoo: 1 zoo
- New Guinea crocodile: Berlin zoo: 1 zoo
- Orinoco crocodile: Yet unseen
Caimans and alligators:
- American alligator: Barcelona, Lisbon, Bronx, Taronga and Auckland zoos, Sigean safari park, Prague crocodile gallery and American Museum of Natural History: 8 zoos
- Cuvier's dwarf caiman: Barcelona, Madrid, Lisbon and Central Park zoos and Prague crocodile gallery: 5 zoos
- Spectacled caiman: Barcelona zoo, Barcelona Aquarium, CRARC, Faunia, Prague crocodile gallery: 5 zoos
- Chinese alligator: Barcelona, Rome, Bronx and Hong Kong zoos, Ocean Park Hong Kong; 5 zoos
- Schneider's dwarf caiman: Rome zoo and Cosmocaixa: 2 zoos
- Yacare caiman: Barcelona zoo: 1 zoo
- Broad-snouted caiman: Barcelona zoo: 1 zoo
- Black caiman: yet unseen
Gharials:
- Malaysian gharial: Barcelona, Bronx and Singapore zoos: 3 zoos
- Indian gharial: Prague zoo, Singapore night safari: 2 zoos