Traditionally, the anemonefishes are split into 2 genera - Amphiprion and Premnas, with Premnas being monotypic. The main distinguishing characteristic between these two traditional genera is the presence of large spines on the gill plate of Premnas, which are lacking in Amphiprion. However, recent phylogeny studies have shown that Amphiprion is paraphyletic if Premnas is excluded from it, so Premnas is now ranked as a subgenus within Amphiprion.
All anemonefishes are now placed in genus Amphiprion, which contains 5 subgenera - Actinicola, Premnas, Amphiprion, Paramphiprion and Phalerebus. Within these subgenera are several species groups. Many species are in fact species complexes, and the species contained within are often undescribed. For taxonomy, I will be referring to Amphiprionology
Subgenus Premnas
- Indonesian Maroon Clownfish (A. biaculeatus sensu stricto)
- Northern Maroon Clownfish (A. cf. biaculeatus "Northern")
- Gold Maroon Clownfish (A. epigrammata)
- Melanesian Maroon Clownfish (A. gibbosus)
Subgenus Actinicola
- Percula Clownfish (A. percula)
- Western Ocellaris Clownfish (A. ocellaris sensu stricto)
- Northern Ocellaris Clownfish (A. cf. ocellaris "Northern")
- Indonesian Ocellaris Clownfish (A. cf. ocellaris "Indonesia")
Subgenus Paramphiprion
Latezonatus group
- Wideband Anemonefish (A. latezonatus)
Polymnus group
- Northern Saddleback Anemonefish (A. anamensis)
- Melanesian Saddleback Anemonefish (A. laticlavius)
- Indonesian Saddleback Anemonefish (A. polymnus)
- Sebae Anemonefish (A. sebae)
Subgenus Amphiprion
Clarkii group
- Filipino Clark's Anemonefish (A. chrysargyrus)
- Maldivian Clark's Anemonefish (A. clarkii sensu stricto)
- Andaman Clark's Anemonefish (A. cf. clarkii "Andaman")
- Arabian Clark's Anemonefish (A. cf. clarkii "Arabia")
- Barrier Reef Clark's Anemonefish (A. cf. clarkii "Barrier Reef")
- Caroline Clark's Anemonefish (A. cf. clarkii "Caroline")
- Chagos Clark's Anemonefish (A. cf. clarkii "Chagos")
- Indonesian Clark's Anemonefish (A. cf. clarkii "Indonesia")
- Yellowtip Anemonefish (A. cf. clarkii "Mariana")
- Caledonian Anemonefish (A. cf. clarkii "New Caledonia")
- Rowley Shoals Anemonefish (A. cf. clarkii "Rowley Shoals")
- Japanese Anemonefish (A. japonicus)
- Western Australian Anemonefish (A. milii)
- Papuan Anemonefish (A. papuensis)
- Ogasawara Black Anemonefish (A. snyderi)
- Three-band Anemonefish (A. tricinctus)
Akindynos group
- Barrier Reef Anemonefish (A. akindynos sensu stricto)
- Caledonia Akindynos Anemonefish (A. cf. akindynos)
- McCulloch's Anemonefish (A. mccullochi)
Chrysopterus group
- Whitetail Bluestripe Anemonefish (A. chrysopterus sensu stricto)
- Blackfin Bluestripe Anemonefish (A. cf. chrysopterus "Blackfin")
- Fijian Bluestripe Anemonefish (A. cf. chrysopterus "Fiji")
- Mariana Bluestripe Anemonefish (A. cf. chrysopterus "Mariana")
- Polynesian Bluestripe Anemonefish (A. cf. chrysopterus "Polynesia")
- Vanuatu Bluestripe Anemonefish (A. cf. chrysopterus "Vanuatu")
Bicinctus group
- African Anemonefish (A. allardi)
- Red Sea Anemonefish (A. bicinctus)
- Mauritian Anemonefish (A. chrysogaster)
- Seychelles Anemonefish (A. fuscocaudatus)
- Wideband Anemonefish (A. latifasciatus sensu stricto)
- Whitemargin Anemonefish (A. cf. latifasciatus "Whitemargin")
- Yellowmargin Anemonefish (A. cf. latifasciatus "Yellowmargin")
- Oman Anemonefish (A. omanensis)
Melanopus group
- Caledonian Melanopus Anemonefish (A. arion)
- Fijian Dusky Anemonefish (A. barberi)
- Fire Anemonefish (A. ephippium)
- Tomato Clownfish (A. frenatus)
- Cinnamon Anemonefish (A. melanopus sensu stricto)
- Micronesian Melanopus Anemonefish (A. cf. melanopus "Micronesia")
- Samoan Melanopus Anemonefish (A. cf. melanopus "Samoa")
- Melanesian Melanopus Anemonefish (A. monofasciatus)
- Redfin Anemonefish (A. rubrocinctus)
- Australian Melanopus Anemonefish (A. verweyi)
Subgenus Phalerebus
Perideraion group
- Sumatran Skunk Anemonefish (A. akallopisos sensu stricto)
- African Skunk Anemonefish (A. cf. akallopisos "Africa")
- Chagos Skunk Anemonefish (A. chagosensis)
- Blackfoot Skunk Anemonefish (A. nigripes)
- Polynesian Skunk Anemonefish (A. pacificus)
- Pink Skunk Anemonefish (A. perideraion sensu stricto)
- Fijian Skunk Anemonefish (A. perideraion "Fiji")
- Micronesian Skunk Anemonefish (A. perideraion "Micronesia")
Sandaracinos group
- Orangefin Skunk Anemonefish (A. sandaracinos)
Hybrids
- Whitebonnet Anemonefish (A. leucokranos)
- Thielle's Anemonefish (A. thiellei)
All anemonefishes are now placed in genus Amphiprion, which contains 5 subgenera - Actinicola, Premnas, Amphiprion, Paramphiprion and Phalerebus. Within these subgenera are several species groups. Many species are in fact species complexes, and the species contained within are often undescribed. For taxonomy, I will be referring to Amphiprionology
Subgenus Premnas
- Indonesian Maroon Clownfish (A. biaculeatus sensu stricto)
- Northern Maroon Clownfish (A. cf. biaculeatus "Northern")
- Gold Maroon Clownfish (A. epigrammata)
- Melanesian Maroon Clownfish (A. gibbosus)
Subgenus Actinicola
- Percula Clownfish (A. percula)
- Western Ocellaris Clownfish (A. ocellaris sensu stricto)
- Northern Ocellaris Clownfish (A. cf. ocellaris "Northern")
- Indonesian Ocellaris Clownfish (A. cf. ocellaris "Indonesia")
Subgenus Paramphiprion
Latezonatus group
- Wideband Anemonefish (A. latezonatus)
Polymnus group
- Northern Saddleback Anemonefish (A. anamensis)
- Melanesian Saddleback Anemonefish (A. laticlavius)
- Indonesian Saddleback Anemonefish (A. polymnus)
- Sebae Anemonefish (A. sebae)
Subgenus Amphiprion
Clarkii group
- Filipino Clark's Anemonefish (A. chrysargyrus)
- Maldivian Clark's Anemonefish (A. clarkii sensu stricto)
- Andaman Clark's Anemonefish (A. cf. clarkii "Andaman")
- Arabian Clark's Anemonefish (A. cf. clarkii "Arabia")
- Barrier Reef Clark's Anemonefish (A. cf. clarkii "Barrier Reef")
- Caroline Clark's Anemonefish (A. cf. clarkii "Caroline")
- Chagos Clark's Anemonefish (A. cf. clarkii "Chagos")
- Indonesian Clark's Anemonefish (A. cf. clarkii "Indonesia")
- Yellowtip Anemonefish (A. cf. clarkii "Mariana")
- Caledonian Anemonefish (A. cf. clarkii "New Caledonia")
- Rowley Shoals Anemonefish (A. cf. clarkii "Rowley Shoals")
- Japanese Anemonefish (A. japonicus)
- Western Australian Anemonefish (A. milii)
- Papuan Anemonefish (A. papuensis)
- Ogasawara Black Anemonefish (A. snyderi)
- Three-band Anemonefish (A. tricinctus)
Akindynos group
- Barrier Reef Anemonefish (A. akindynos sensu stricto)
- Caledonia Akindynos Anemonefish (A. cf. akindynos)
- McCulloch's Anemonefish (A. mccullochi)
Chrysopterus group
- Whitetail Bluestripe Anemonefish (A. chrysopterus sensu stricto)
- Blackfin Bluestripe Anemonefish (A. cf. chrysopterus "Blackfin")
- Fijian Bluestripe Anemonefish (A. cf. chrysopterus "Fiji")
- Mariana Bluestripe Anemonefish (A. cf. chrysopterus "Mariana")
- Polynesian Bluestripe Anemonefish (A. cf. chrysopterus "Polynesia")
- Vanuatu Bluestripe Anemonefish (A. cf. chrysopterus "Vanuatu")
Bicinctus group
- African Anemonefish (A. allardi)
- Red Sea Anemonefish (A. bicinctus)
- Mauritian Anemonefish (A. chrysogaster)
- Seychelles Anemonefish (A. fuscocaudatus)
- Wideband Anemonefish (A. latifasciatus sensu stricto)
- Whitemargin Anemonefish (A. cf. latifasciatus "Whitemargin")
- Yellowmargin Anemonefish (A. cf. latifasciatus "Yellowmargin")
- Oman Anemonefish (A. omanensis)
Melanopus group
- Caledonian Melanopus Anemonefish (A. arion)
- Fijian Dusky Anemonefish (A. barberi)
- Fire Anemonefish (A. ephippium)
- Tomato Clownfish (A. frenatus)
- Cinnamon Anemonefish (A. melanopus sensu stricto)
- Micronesian Melanopus Anemonefish (A. cf. melanopus "Micronesia")
- Samoan Melanopus Anemonefish (A. cf. melanopus "Samoa")
- Melanesian Melanopus Anemonefish (A. monofasciatus)
- Redfin Anemonefish (A. rubrocinctus)
- Australian Melanopus Anemonefish (A. verweyi)
Subgenus Phalerebus
Perideraion group
- Sumatran Skunk Anemonefish (A. akallopisos sensu stricto)
- African Skunk Anemonefish (A. cf. akallopisos "Africa")
- Chagos Skunk Anemonefish (A. chagosensis)
- Blackfoot Skunk Anemonefish (A. nigripes)
- Polynesian Skunk Anemonefish (A. pacificus)
- Pink Skunk Anemonefish (A. perideraion sensu stricto)
- Fijian Skunk Anemonefish (A. perideraion "Fiji")
- Micronesian Skunk Anemonefish (A. perideraion "Micronesia")
Sandaracinos group
- Orangefin Skunk Anemonefish (A. sandaracinos)
Hybrids
- Whitebonnet Anemonefish (A. leucokranos)
- Thielle's Anemonefish (A. thiellei)
