My guess is that they'll selectively breed all the known Barbary-descendent lions to "purity" until the program achieves somewhat fully pure Barbary lineage, as it has been done in the last years.
This also means that EAZA manages Indian and Barbary as separate, as it has always been the case, new taxonomy or not, merging these animals now would mean playing God with nature: they've been selected for years and years and if they will be used for reintroduction, which is always a plan for long term conservation, it's better this way according to the IUCN's principle of closest kin possible for reintroductions.
It may not be too good-looking from a genetic diversity point of view, but that doesn't excuse collegues on the other side of the Atlantic from doing the easiest thing while proclaiming that it is for genetic diversity that looks good on paper, and the fact that they don't even bother to control borders between subspecies: while current AZA higher ups don't see subspecies as worthy units of conservation, they seemed interested in selecting and managing the southern clade, but they imported sudanese lions that belong to the northern clade, so not even doing what they were supposed to correctly.