Here is a list:
1. Meerkat
2. Black-necked Swan/Mallard Ducks
3. Flamingo (Chilean and American)
8. Not sure (Used to be American Alligator)
9. Grey Seal
10. Gray Kangaroo, Tammar Wallaby, Koala
11. Koala, Tammar Wallaby, Short-nosed Echidna
12. Red-knobbed Hornbill, Yellow-footed Rock Wallaby
13. Komodo Dragon
-(exhibit between 13 and 14) Yellow-footed Rock Wallaby
14. Double-wattled Cassowary
15. Red Kangaroo
16. Black-headed Weaver, Superb Starling, Rock Hyrax
-(exhibit between 16 and 17) Congo Peafowl
17. Laughing Kookaburra
18.(3 exhibits) *Hawk and Marsh birds (Ibis, spoonbill, snowy egret)
19. African Wild Dog
20. Alpaca and Chacoan Peccary
21. Chacoan Peccary
22. Speke's Gazelle
23. American River Otters
24. Babirusa
25. Lowland Anoa
26. Desert Bighorn Sheep
27-28. Peninsular Pronghorn
29.(3 exhibits) *Bat-eared Fox, *Channel Island Fox, *Coati
30. Grevy's Zebra
31-32. Campo Gorilla Reverse
33. Red Ape Rainforest
35. Bongo/Yellow-backed Duiker
36. Nubian Ibex
37. Gerenuk
38.(2 exhibits) (*Superb Starling, White-Crested Turaco, Red-flanked Duiker, Royal Antelope), (*Lady Ross's Turaco, White-headed Buffalo-weaver, Black Duiker)
39. African Lion
40. Masai Giraffe
41. Chimpanzees of Mahale Mountains
42.(3 exhibits) *Fossa, *Buff-cheeked Gibbon
43. Okapi, Black Duiker
44.(2 exhibits) *Eastern Black-and-white Colobus Monkey
45.(2 exhibits) *Coquerel's Sifaka, *Sclater's Blue-Eyed Black Lemur
46. Mandrill
47. Serval
48.(2 exhibits) *Madagascar Radiated Tortoise, *Ring-tailed Lemur
49. Black Duikers
50. Lowland Anoa
51. Giant Eland
52. Ostrich
53. Red River Hog
54. Central Chinese Goral
55.(2 exhibits) *Steller's Sea Eagle, *African Fish Eagle
56. (2 exhibits) Siamang, Moustached Guenon
57. Sichuan Takin
58. Nothing right now
59. Tadjik Markhor
60. Indian Rhino
61. Hippo
62. Sumatran Tiger
63. American Black Bear
64.(4 exhibits) *Harpy Eagle, *Japanese Mountain Hawk-eagle, *African Crowned Eagle, *Debrazza's Guenon
65. Indian Rhino
66. Tufted Deer
67. Japanese Serow
68. Visayan Warty Pig
69. Calamian Deer
70. Snow Leopard
71.(3 exhibits) *Pale-headed Saki, Emperor Tamarin, Agouti, *Squirrel Monkey, *Golden Lion Tamarin, and Agouti
72. Mountain Tapir
73.(3 exhibits) *Red-legged Seriema, *King Vulture, *Jaguar
74. Agouti, Common Marmoset
75.(3 exhibits) *Crested Capuchin Monkey, *Black-handed Spider Monkey, *Black Howler, Pale-headed Saki, Agouti
76.(3 exhibits) *Scarlet Macaw, Crested Oropendola, *Andean Condor, *Toucan (forgot species)
77. Giant Otters
78. Maned Wolf
79.(2 exhibits) *Great Curassow *Crested Screamer
80. Aldabra Tortoise
81. Cape Vulture
Aviary:
Inca Tern
Plush-crested Jay
Roseatte Spoonbill
Sacred Ibis
Violaceous Turaco
West African Crowned Crane
White-faced Whistling Duck
Greater Flamingo
Sunbittern
Green Turaco
Purple Glossy Starling
Blue-eared Glossy Starling
Nicobar Pigeon
Scheepmaker's Crowned Pigeon
Children's Zoo:
Brown Pelican
Axolotl
Ocelot
Slow Loris
Prehensile-tailed Porcupine
Lesser Asian Civet
Cotton-top Tamarin
Southern Three-banded Armadillo
Komodo Dragon babies
Greater Malay Chevrotain
Meerkat
Prairie Dog
Babies (not all the times): Gerenuk, Red-flanked Duiker, Peninsular Pronghorn, Black Duiker, Yellow-backed Duiker