Fishes (minus marine fishes because most of the fishes found in Red Sea and Persian Gulf are also found in Indonesia):
- Sterlet (Acipenser ruthenus, Jakarta Aquarium and formerly in Dunia Air Tawar)
- Russian sturgeon (Acipenser gueldenstaedtii, privately owned)
- Aral barbel (Luciobarbus brachycephalus, privately owned)
- Common carp (Cyprinus carpio, almost all Indonesian zoos and aquaria)
- Rosy barb (Pethia conchonius, Dunia Air Tawar)
- Wels catfish (Silurus glanis, formerly in Dunia Air Tawar)
- None
- Balkan terrapin (Mauremys rivulata, privately owned)
- Russian tortoise (Agrionemys horsfieldii, privately owned)
- Veiled chameleon (Chamaeleo calyptratus, privately owned)
- Ornate uromastyx (Uromastyx ornata, privately owned)
- None
- Griffon vulture (Gyps fulvus, Taman Safari Cisarua)
- Demoiselle crane (Grus virgo, Taman Safari Cisarua)
- Syrian brown bear (Ursus arctos syriacus, formerly in Taman Safari Prigen)
- Snow leopard (Panthera uncia, Batu Secret Zoo and formerly in Taman Safari Cisarua)
- Caracal (Caracal caracal, Taman Safari Cisarua and Lembang Zoo & Park)
- Turkestan sand cat (Felis margarita thinobia, privately owned)
- Striped hyena (Hyaena hyaena, Batu Secret Zoo, Bali Safari and Bali Zoo)
- Syrian hamster (Mesocricetus auratus, privately owned)
- Roborovski hamster (Phodopus roborovskii, privately owned)
- Bactrian camel (Camelus bactrianus, Taman Safari Cisarua and Prigen)
- Dromedary camel (Camelus dromedarius, almost all Indonesian zoos)
- Scimitar-horned oryx (Oryx dammah, formerly in Taman Safari Cisarua)
- Markhor (Capra falconeri, formerly in Batu Secret Zoo and Taman Safari Prigen)