Some thoughts on the bird subjects.
Parrots
Parrots in zoos are aften kept in non-breeding situations and very often in pairs or small groups, and are regularly wing-clipped. This seems not ideal, but in reality there are other factors that matter. Still a lot of parrots in zoos originate as unwanted pets, especially in the case of smaller zoos and more common species. Zoos still take them in as they are relatively easy and crowd-pleasing birds. These birds are often difficult to introduce to one another, hence the situations were they are kept in pairs (if a working match can be found). Furthermore, many have underdeveloped wing muscles and thus they can hardly fly. A larger, open enclosure with more branches and ropes to climb can be the best possible solution for these particular animals. It should however, never be the norm for parrots without a history like this.
Raptors
The subject of poined waterfowl, pelicans, cranes, storks and flamingos is quite difficult. It is not difficult for raptors, ibisses and parrots, they simply should never be poined by zoos. It becomes a little more complex when it involves rescued birds (like the parrots I mentioned above). A high percentage of vultures in European zoos are rescued animals from southern Europe (Spain, Portugal), that can't be released as they can't fly. I believe that many American zoos keep bald eagles in the same situation. The subject about flying space is more complex, as I know several zoos that did give their raptors lots of space, and they still hardly fly. Many wild birds-of-prey are often quite inactive when they are not searching for a meal or migrating. A buzzard in a zoo doesn't need to circle for hours to get prey, so they remain relatively inactive for most of the day. There are exceptions, in my experience kites and falcons remain quite active. This of course, doesn't justify situations were they are kept in inadequate enclosures, but is does show that the situation is more complex that one might think.
Waterfowl
Even more complex is the waterfowl, flamingo and pelican situation. For cranes and storks it's easier, they often have trouble mating if poined, so they should be kept in some sort of aviary, if we want to keep on displaying them in the long run. Same goes for the smaller flamingo species. The others I mentioned (the Phoenicopterus-flamingos, pelicans and Anatidae*) can thrive in poined situations. There are again a couple of exceptions, and I agree it is better to keep them full-winged, if all other factors stay the same. But that's often not the case. Poined waterfowl can occupy huge ponds and a decent amount of land space. It is often expensive or difficult to build ponds that size in an aviary. I really think the pelicans in Walsrode, where they live on huge ponds, have a better life than ones kept in small aviaries. The thing is, most zoo people know that these birds should not be poined or wing-clipped in an ideal situation, but reality is usually not ideal. It often ends up in a choice between a bigger pond and more land space, or the ability to fly. Which is better really depends on the situation at hand.
I'm not trying to argue with anyone, and I agree that the husbandry of the species mentioned often needs improving. Many zoos are actually slowly moving into the right direction (more aviaries, less poining/wing-clipping). I only tried to give some insight in why these difficult choices are made by zoos.
* I've too little experience with other Anseriformes to judge.