Holy crow! Look at all of the postings!
A few quick answers:
No, the zoo is not closing. The "end of the 34 year old organization" line was about the Toronto Zoo Foundation; currently their only purpose is fundrasing ... if they are not allowed to do so, then there is no purpose for the Foundation.
The capybara have all left the zoo. Before construction started, all of the animals were slated to be moved from the Americas paddocks, including the temple. The llamas, mara, capybara were moved first - however, since that time (but before the rest of the temple was emptied), the plans for the tundra were scaled back (hence all of the other animals still living at the temple).
Muntjac: there are only two muntjac at the zoo right now - one in with the rhinos and one with the gaur. They are very good at hiding and also have a lot of off-exhibit space that they can retreat to if they wish.
Babies: ZooGoer is correct, although we did have P. horses (and kudu, I think) born last year as well. Also to add to the list: two marabou storks, with two eggs still in incubators.